PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01775g02013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NF-YB
Protein Properties Length: 152aa    MW: 16157.8 Da    PI: 4.3974
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01775g02013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB187.11.3e-5821116297
                     NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                               reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplk+y
  Peinf101Scf01775g02013.1  21 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIY 105
                               89*********************************************************************************** PP

                     NF-YB  87 lkkyrelegek 97 
                               l+kyre+egek
  Peinf101Scf01775g02013.1 106 LAKYREMEGEK 116
                               *********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.6E-5516118IPR009072Histone-fold
SuperFamilySSF471133.88E-4123122IPR009072Histone-fold
PfamPF008083.2E-282690IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.0E-215472No hitNo description
PROSITE patternPS0068505773IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.0E-217391No hitNo description
PRINTSPR006152.0E-2192110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MADSDNESGG HNAGNGEGSQ REQDRFLPIA NVSRIMKKAL PANAKISKDA KETVQECVSE  60
FISFITGEAS DKCQREKRKT INGDDLLWAM TTLGFEEYVE PLKIYLAKYR EMEGEKTTMG  120
GGGGGGGGGG GGGGGGGGEP PLFEFEFFDG DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B7e-4921111292Transcription factor HapC (Eurofung)
4g91_B7e-4921111292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622977.15e-83PREDICTED: nuclear transcription factor Y subunit B-3-like, partial
SwissprotO233103e-76NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A0V0H7342e-82A0A0V0H734_SOLCH; Putative nuclear transcription factor Y subunit B-3-like (Fragment)
STRINGPGSC0003DMT4000109775e-81(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.15e-76nuclear factor Y, subunit B3